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Genomics
Phylogenetics
Microbiomes
Public Health
Museum Collections
Shigella
Epidemiological curve of ongoing Shigella flexneri outbreak centered in Bernalillo County, New Mexico
Maximum likelihood phylogeny of 128 S. flexneri sequences < 65 SNPs of the outbreak in New Mexico
Figures from Shrum Davis et al. (in review)
Time scaled BEAST phylogeny of shigellosis outbreak including 191 genomes of which 176 were from New Mexico
Tree topology comparisons of BEAST phylogenies using the external reference Shigella flexneri 2a str. 301 and an internal reference strain PNUSAE076676.
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